A MOLECULAR PHYLOGENY OF ALPINIA ROXB. (ZINGIBERACEAE): AN OVERVIEW FOR PHYLOGENY OF VIETNAMESE ALPINIA | Toàn | TNU Journal of Science and Technology

A MOLECULAR PHYLOGENY OF ALPINIA ROXB. (ZINGIBERACEAE): AN OVERVIEW FOR PHYLOGENY OF VIETNAMESE ALPINIA

About this article

Received: 23/02/21                Revised: 19/03/21                Published: 06/04/21

Authors

Le Chi Toan Email to author, Ha Noi Pedagogical University 2

Abstract


The genus Alpinia is the largest member of Zingiberaceae, but its phylogeny is still unclear. The studies in Vietnam have been focusing only on new records and new species of Alpinia for the Vietnamese flora. Thus, an overview of the phylogeny of Vietnamese Alpinia is necessary. This work based on molecular data from matK and ITS regions of 149 species confirms that Alpinia is supported to be a polyphyletic group with six different clades. 25/37 Vietnamese Alpinia species were included in the molecular analyses, results indicated that Vietnamese Alpinia formed non-monophyletic group and was placed in clades II, IV and V of Alpinia. Most Vietnamese Alpinia are placed in clade IV, which also included species from Southern China, and South East Asia. Based on the molecular analyses, Vietnamese Alpinia is genetically closely related even though they are distributed in the whole of Vietnam including subtropical and tropical regions and their morphological apomorphies are difficult to find.


Keywords


Molecular phylogeny; Nonmonophyletic; Alpinia; Overview; Vietnam

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References


[1] C. R. Darwin, On the origin of species by means of natural selection, or the preservation of favoured races in the struggle for life. London: John Murray, 1859.

[2] T. A. Brown, Genomes. Oxford, U.K: BIOS Scientific Publishers, 2002.

[3] W. J. Kress, A. Z. Liu, M. Newman, and Q. J. Li, “The molecular phylogeny of Alpinia (Zingiberaceae): A complex and polyphyletic genus of gingers,” American Journal of Botany, vol. 92, pp. 167-178, 2005.

[4] X. D. Vu, C. T. Le, T. B. Do, P. B. Cao, Q. B. Nguyen, T. C. Vu, T. L. Dang, V. D. Nguyen, and B. Liu, “Phylogeny of Alpinia coriandriodora D. Fang and implications for character evolution and conservation,” Pakistan Journal of Biological Sciences, vol. 24, pp. 1-12, 2021.

[5] A. Rangsiruji, M. F. Newman, and Q. C. B. Cronk, “A study of the infrageneric classification of Alpinia (Zingiberaceae) based on the ITS region of nuclear rDNA and the trnL-F spacer of chloroplast DNA,” in Monocots-Systematics and evolution, K. L. Wilson and D. A. Morrison, Eds., Collingwood, Australia: CSIRO Publishing, 2000, pp. 728.

[6] W. J. Kress, L. M. Prince, and K. J. Williams, “The phylogeny and a new classification of the gingers (Zingiberaceae): Evidence from molecular data,” American Journal of Botany, vol. 89, pp. 1682-1696, 2002.

[7] D. T. Nghiem, Q. B. Nguyen, V. O. Tran, P. H. Nguyen, and T. T. Nguyen, “a new record species in the genus Alpinia (Alpinia graminifolia D. Fang & G.Y. Lo) for Vietnam flora,” VNU Journal of Science: Natural Sciences and Technology, vol. 34, pp. 16-20, 2018.

[8] X. D. Vu, Q. B. Nguyen, T. L. Dang, D. T. Nghiem, P. B. Cao, T. C. Vu, X. Ye, and N. H. Xia, “Alpinia coriandriodora D. Fang, a new record for flora of Vietnam,” Journal of Tropical and Subtropical Botany, vol. 27, pp. 99-101, 2019.

[9] H. T. Luu, H. D. Tran, T. L. Nguyen, Q. B. Nguyen, and L. S. Jana, “Alpinia vietnamica (zingiberaceae), a new species from central vietnam,” Annales Botanici Fennici, vol. 56, pp. 221-226, 2019.

[10] M. Kearse, R. Moir, A. Wilson, S. Stones-Havas, M. Cheung, S. Sturrock, S. Buxton, A. Cooper, S. Markowitz, C. Duran, T. Thierer, B. Ashton, P. Mentjies, and A. Drummond, “Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data,” Bioinformatics, vol. 28, pp. 1647-1649, 2012.

[11] A. Stamatakis, “RAxML-VI-HPC, maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models,” Bioinformatics, vol. 22, pp. 2688-2690, 2006.

[12] D. Darriba, G. L. Taboada, R. Doallo, and D. Posada, “jModelTest 2: more models, new heuristics and parallel computing,” Nature Methods, vol. 9, pp. 772, 2012.

[13] F. Ronquist and J. P. Huelsenbeck, “MrBayes 3, Bayesian phylogenetic inference under mixed models,” Bioinformatics, vol. 19, pp. 1572-1574, 2003.

[14] M. A. Miller, W. Pfeiffer, and T Schwartz, “Creating the CIPRES Science Gateway for inference of large phylogenetic trees,” Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans, USA: Institute of Electrical and Electronics Engineers (IEEE), 2010, pp. 1-8.

[15] A. Rambaut and A. J. Drummond, “Tracer,” 2007. [Online]. Available: http://tree.bio.ed.ac.uk/software/tracer/. [Accessed Jan 05, 2021].

[16] D. L. Wu and L. Kai, “Zingiberaceae,” in Flora of China (Flagellariaceae through Marantaceae), vol. 24, Z. Y. Wu, P. H. Raven, and D. Y. Hong, Eds., Beijing: Science Press, 2000, pp. 322-377.

[17] H. H. Pham, An Illustrated Flora of Vietnam. Tre Publishing House, Ho Chi Minh city, vol. 3, pp. 432-461, 2000.

[18] Q. B. Nguyen, Zingiberaceae Lindl.- Ho Gung. Checklist of plant species of Vietnam. Publishing House of Agriculture, Hanoi, vol. 3, pp. 487-508, 2005.

[19] Q. B. Nguyen, “Zingiberaceae,” in Flora of Vietnam, vol. 21, Publishing House of Natural Science and Technology, Hanoi, 2017, pp. 9-109.

[20] N. S. Ly, “Alpinia newmanii sp. Nov. (Zingiberaceae) from central Vietnam,” Nordic Journal of Botany, vol. 35, pp. 1-6, 2017.




DOI: https://doi.org/10.34238/tnu-jst.4022

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